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  1. Home
  2. Causal Analysis/Diagnosis Decision Information System (CADDIS)

PECBO Appendix: Site Map

Introduction

  • Overview
  • Module Organization
  • Theory
  • Definitions

Using Taxon-Environment Relationships

  • Overview
  • Download Files & Set Up R
  • Standardize Taxonomy
  • Assign Operational Taxonomic Units (OTUs)
  • Compute Biological Inferences

Estimating Taxon-Environment Relationships

  • Overview
  • Central Tendencies
  • Environmental Limits
  • Parametric Regressions
  • Non-parametric Regression
  • Assessing Model Fit
  • Measurement Error
  • Survey Weighting
  • Placing Taxa into Tolerance Categories

Computing Inferences

  • Overview
  • Weighted Average Inferences
  • Maximum Likelihood Inferences

R Scripts

  • Overview
  • Download R Scripts and Sample Data
  • Loading Data
  • Central Tendencies
  • Environmental Limits
  • Parametric Regressions
  • Non-Parametric Regressions
  • Significance Tests
  • Area Under the ROC Curve
  • Curve Shape
  • Weighted Average Inference
  • Estimate Taxon-Environment Relationships Using taxon.env()

Causal Analysis/Diagnosis Decision Information System (CADDIS)

  • CADDIS Home
    • About CADDIS
    • Frequent Questions
    • Publications
    • Recent Additions
    • Related Links
    • CADDIS Glossary
  • Volume 1: Stressor Identification
    • About Causal Assessment
    • Getting Started
    • Step 1. Define the Case
    • Step 2. List Candidate Causes
    • Step 3. Evaluate Data from the Case
    • Step 4. Evaluate Data from Elsewhere
    • Step 5. Identify Probable Causes
  • Volume 2: Sources, Stressors and Responses
    • About Sources
      • Urbanization
    • About Stressors
  • Volume 3: Examples and Applications
    • Analytical Examples
    • Worksheet Examples
    • State Examples
    • Case Studies
    • Galleries
  • Volume 4: Data Analysis
    • Selecting an Analysis Approach
    • Getting Started
    • Basic Principles & Issues
    • Exploratory Data Analysis
    • Basic Analyses
    • Advanced Analyses
    • PECBO Appendix
    • Download Software
    • Data Analysis Topics (A -Z)
  • Volume 5: Causal Databases
    • Learn about CADLink
Contact Us about CADDIS
Contact Us about CADDIS to ask a question, provide feedback, or report a problem.
Last updated on February 29, 2024
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